PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g022290.1
Common NameMTR_1g022290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 94aa    MW: 10892.3 Da    PI: 9.3143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g022290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTt   +++ +a + + ++   +W + ar +g g+t +++k ++ +
  Medtr1g022290.1  6 AWTTKQNKRFENALAIYDKDtpdRWQKLARAVG-GKTVEEVKRHYEM 51
                     8********************************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.781257IPR017884SANT domain
SMARTSM007171.7E-7355IPR001005SANT/Myb domain
CDDcd001677.42E-6653No hitNo description
Gene3DG3DSA:1.10.10.602.3E-5659IPR009057Homeodomain-like
PfamPF002496.0E-7652IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSSSAWTTK QNKRFENALA IYDKDTPDRW QKLARAVGGK TVEEVKRHYE MLVEDLKQIE  60
EGHVPLPKYR NAATIKGYNY SDEEQRLKYL SLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-31293693RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466107.11e-64MYB family transcription factor
SwissprotF4JVB84e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A072VEW41e-64A0A072VEW4_MEDTR; MYB family transcription factor
STRINGGLYMA14G08101.17e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-37RAD-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]